R to probe the difference in stability between biotinDNA-Dig and tST-DNA-biotin

R to probe the difference in stability between biotinDNA-Dig and tST-DNA-biotin tethers more exhaustively, we tested for the ability to sustain high forces for long periods of time. In this experiment, tethers were first stretched to 65 pN and those that survived the first pull were kept under constant force of , 60 pN until they broke. Figure 3a Title Loaded From File illustrates a case of (STN)tSTDNA-biotin(NTV) handle that could survive this load for an hour. In the second pull, the handle was stretched to 60 pN (in less than 1 min) and kept under force feedback for 60 min without breaking. Next, it was relaxed (Figure 3a, in between 60:00 and 60:30 min:sec) and showed a characteristic cycle of DNA overstretching (Figure 3a, in between 60:30 and 61:30 min:sec). The tether broke after additional 22 pulling cycles. Importantly, the fraction of strong tethers resisting more than 10 min at 60 pN in the second pull was found to be significantly higher with tST-STN as compared to Dig-AntiDig (Figure 3b). Thus, the tST-DNAbiotin handle is able to withstand high forces for longer than the biotin-DNA-Dig handle.Optical Tweezers Study of Protein-DNA HybridsConclusionsWe have presented a simple procedure to specifically attach a protein to a DNA molecule, using STN-tST linkages. The method is rapid and straightforward, and can be established in-situ within biologically relevant buffers. Binding of the DNA-tST construct to surface immobilized STN shows high mechanical stability, and can readily tolerate forces as high as 65 pN for tens of minutes. The engineered linkage can be used as a reliable linker for optical tweezers studies of proteins and nucleic acids, both in constant pulling rate and force modes [38?0]. The motivation to use STN to end-join two molecules was based on reported high rupture forces (40 pN and 60 pN) [28]. We found that the average rupture force was beyond the overstretching transition of 65 pN for the ST-STN linkage studied here, which may be due to the dual ST repeats or other experimental differences. The specificity, stability, and rapid in-situ formation of the STN-tST complex allows it to be used in combination with other well-used linkages that can also be stably formed in-situ, such as NTV-biotin. Dig-AntiDig linkages of similar stability can be formed, but they require bulk incubation. Thus, choice of linkage depends on the precise application and formation possibilities. We find that tST-STN is more stable against applied force than the commonly used biotin-STV linkage. Moreover, we show that tST-STN can be used for surface attachments as well as for linkage between DNA and protein molecules, which has not been achieved for Dig-AntiDig linkages. Because of the high stability of STN, this complex could potentially also be used in a broad thermal range and harsh conditions. We have shown that constructing tST-DNA hybrids is straightforward using PCR amplification, making our method suitable for broad applications. For single molecule studies, the presented approach could be applied in combination with other peptide-DNA hybrids. For example, halo tags-DNA hybrid could be constructed as a handle and be linked covalently to halogenasecoated beads. Similarly, a peptide substrate to ubiquitin ligase could be used to Title Loaded From File generate peptide-DNA hybrid and then be linked to the protein ligase-coated bead. The reversibility of the ST-STN reaction, using Desthiobiotin [24], will make the ST-STN linkage also highly suitable for biologically inspired sof.R to probe the difference in stability between biotinDNA-Dig and tST-DNA-biotin tethers more exhaustively, we tested for the ability to sustain high forces for long periods of time. In this experiment, tethers were first stretched to 65 pN and those that survived the first pull were kept under constant force of , 60 pN until they broke. Figure 3a illustrates a case of (STN)tSTDNA-biotin(NTV) handle that could survive this load for an hour. In the second pull, the handle was stretched to 60 pN (in less than 1 min) and kept under force feedback for 60 min without breaking. Next, it was relaxed (Figure 3a, in between 60:00 and 60:30 min:sec) and showed a characteristic cycle of DNA overstretching (Figure 3a, in between 60:30 and 61:30 min:sec). The tether broke after additional 22 pulling cycles. Importantly, the fraction of strong tethers resisting more than 10 min at 60 pN in the second pull was found to be significantly higher with tST-STN as compared to Dig-AntiDig (Figure 3b). Thus, the tST-DNAbiotin handle is able to withstand high forces for longer than the biotin-DNA-Dig handle.Optical Tweezers Study of Protein-DNA HybridsConclusionsWe have presented a simple procedure to specifically attach a protein to a DNA molecule, using STN-tST linkages. The method is rapid and straightforward, and can be established in-situ within biologically relevant buffers. Binding of the DNA-tST construct to surface immobilized STN shows high mechanical stability, and can readily tolerate forces as high as 65 pN for tens of minutes. The engineered linkage can be used as a reliable linker for optical tweezers studies of proteins and nucleic acids, both in constant pulling rate and force modes [38?0]. The motivation to use STN to end-join two molecules was based on reported high rupture forces (40 pN and 60 pN) [28]. We found that the average rupture force was beyond the overstretching transition of 65 pN for the ST-STN linkage studied here, which may be due to the dual ST repeats or other experimental differences. The specificity, stability, and rapid in-situ formation of the STN-tST complex allows it to be used in combination with other well-used linkages that can also be stably formed in-situ, such as NTV-biotin. Dig-AntiDig linkages of similar stability can be formed, but they require bulk incubation. Thus, choice of linkage depends on the precise application and formation possibilities. We find that tST-STN is more stable against applied force than the commonly used biotin-STV linkage. Moreover, we show that tST-STN can be used for surface attachments as well as for linkage between DNA and protein molecules, which has not been achieved for Dig-AntiDig linkages. Because of the high stability of STN, this complex could potentially also be used in a broad thermal range and harsh conditions. We have shown that constructing tST-DNA hybrids is straightforward using PCR amplification, making our method suitable for broad applications. For single molecule studies, the presented approach could be applied in combination with other peptide-DNA hybrids. For example, halo tags-DNA hybrid could be constructed as a handle and be linked covalently to halogenasecoated beads. Similarly, a peptide substrate to ubiquitin ligase could be used to generate peptide-DNA hybrid and then be linked to the protein ligase-coated bead. The reversibility of the ST-STN reaction, using Desthiobiotin [24], will make the ST-STN linkage also highly suitable for biologically inspired sof.